Update dependencies

modules/common/src/main/scala/docspell/common/LenientUri.scala

@@ -8,51 +8,78 @@ import cats.data.NonEmptyList
 import cats.effect.{Blocker, ContextShift, Sync}
 import docspell.common.LenientUri.Path
 import io.circe.{Decoder, Encoder}
+import java.net.URLEncoder
 import scodec.bits.ByteVector
+import cats.effect.Resource
+import java.net.HttpURLConnection
 
 /** A URI.
   *
   * It is not compliant to rfc3986, but covers most use cases in a convenient way.
   */
-case class LenientUri(scheme: NonEmptyList[String]
-  , authority: Option[String]
-  , path: LenientUri.Path
-  , query: Option[String]
-  , fragment: Option[String]) {
+case class LenientUri(
+    scheme: NonEmptyList[String],
+    authority: Option[String],
+    path: LenientUri.Path,
+    query: Option[String],
+    fragment: Option[String]
+) {
 
   def /(segment: String): LenientUri =
     copy(path = path / segment)
 
-  def ++ (np: Path): LenientUri =
+  def ++(np: Path): LenientUri =
     copy(path = np.segments.foldLeft(path)(_ / _))
 
-  def ++ (np: String): LenientUri = {
+  def ++(np: String): LenientUri = {
     val rel = LenientUri.stripLeading(np, '/')
     ++(LenientUri.unsafe(s"a:$rel").path)
   }
 
+  def withQuery(name: String, value: String): LenientUri =
+    withQueryPlain(name, URLEncoder.encode(value, "UTF-8"))
+
+  def withQueryPlain(name: String, value: String): LenientUri =
+    copy(query = query.map(q => q + "&" + name + "=" + value).orElse(Option(s"$name=$value")))
+
+  def withFragment(f: String): LenientUri =
+    copy(fragment = Some(f))
+
   def toJavaUrl: Either[String, URL] =
     Either.catchNonFatal(new URL(asString)).left.map(_.getMessage)
 
-  def readURL[F[_]: Sync : ContextShift](chunkSize: Int, blocker: Blocker): Stream[F, Byte] =
-    Stream.emit(Either.catchNonFatal(new URL(asString))).
-      covary[F].
-      rethrow.
-      flatMap(url => fs2.io.readInputStream(Sync[F].delay(url.openStream()), chunkSize, blocker, true))
+  def open[F[_]: Sync]: Either[String, Resource[F, HttpURLConnection]] =
+    toJavaUrl.map { url =>
+      Resource
+        .make(Sync[F].delay(url.openConnection().asInstanceOf[HttpURLConnection]))(
+          conn => Sync[F].delay(conn.disconnect())
+        )
+    }
+
+  def readURL[F[_]: Sync: ContextShift](chunkSize: Int, blocker: Blocker): Stream[F, Byte] =
+    Stream
+      .emit(Either.catchNonFatal(new URL(asString)))
+      .covary[F]
+      .rethrow
+      .flatMap(
+        url => fs2.io.readInputStream(Sync[F].delay(url.openStream()), chunkSize, blocker, true)
+      )
 
   def host: Option[String] =
-    authority.
-      map(a => a.indexOf(':') match {
-        case -1 => a
-        case n => a.substring(0, n)
-      })
+    authority.map(
+      a =>
+        a.indexOf(':') match {
+          case -1 => a
+          case n  => a.substring(0, n)
+        }
+    )
 
   def asString: String = {
     val schemePart = scheme.toList.mkString(":")
-    val authPart = authority.map(a => s"//$a").getOrElse("")
-    val pathPart = path.asString
-    val queryPart = query.map(q => s"?$q").getOrElse("")
-    val fragPart = fragment.map(f => s"#$f").getOrElse("")
+    val authPart   = authority.map(a => s"//$a").getOrElse("")
+    val pathPart   = path.asString
+    val queryPart  = query.map(q => s"?$q").getOrElse("")
+    val fragPart   = fragment.map(f => s"#$f").getOrElse("")
     s"$schemePart:$authPart$pathPart$queryPart$fragPart"
   }
 }
@@ -68,30 +95,30 @@ object LenientUri {
   }
   case object RootPath extends Path {
     val segments = Nil
-    val isRoot = true
-    val isEmpty = false
+    val isRoot   = true
+    val isEmpty  = false
     def /(seg: String): Path =
       NonEmptyPath(NonEmptyList.of(seg))
     def asString = "/"
   }
   case object EmptyPath extends Path {
     val segments = Nil
-    val isRoot = false
-    val isEmpty = true
+    val isRoot   = false
+    val isEmpty  = true
     def /(seg: String): Path =
       NonEmptyPath(NonEmptyList.of(seg))
     def asString = ""
   }
   case class NonEmptyPath(segs: NonEmptyList[String]) extends Path {
     def segments = segs.toList
-    val isEmpty = false
-    val isRoot = false
+    val isEmpty  = false
+    val isRoot   = false
     def /(seg: String): Path =
       copy(segs = segs.append(seg))
     def asString = segs.head match {
-      case "." => segments.map(percentEncode).mkString("/")
+      case "."  => segments.map(percentEncode).mkString("/")
       case ".." => segments.map(percentEncode).mkString("/")
-      case _ => "/" + segments.map(percentEncode).mkString("/")
+      case _    => "/" + segments.map(percentEncode).mkString("/")
     }
   }
 
@@ -104,11 +131,12 @@ object LenientUri {
   def parse(str: String): Either[String, LenientUri] = {
     def makePath(str: String): Path = str.trim match {
       case "/" => RootPath
-      case "" => EmptyPath
-      case _ => NonEmptyList.fromList(stripLeading(str, '/').split('/').toList.map(percentDecode)) match {
-        case Some(nl) => NonEmptyPath(nl)
-        case None => sys.error(s"Invalid url: $str")
-      }
+      case ""  => EmptyPath
+      case _ =>
+        NonEmptyList.fromList(stripLeading(str, '/').split('/').toList.map(percentDecode)) match {
+          case Some(nl) => NonEmptyPath(nl)
+          case None     => sys.error(s"Invalid url: $str")
+        }
     }
 
     def makeNonEmpty(str: String): Option[String] =
@@ -128,9 +156,13 @@ object LenientUri {
         case n =>
           pqf.indexOf('#', n) match {
             case -1 =>
-              (makePath(pqf.substring(0, n)), makeNonEmpty(pqf.substring(n+1)), None)
+              (makePath(pqf.substring(0, n)), makeNonEmpty(pqf.substring(n + 1)), None)
             case k =>
-              (makePath(pqf.substring(0, n)), makeNonEmpty(pqf.substring(n+1, k)), makeNonEmpty(pqf.substring(k+1)))
+              (
+                makePath(pqf.substring(0, n)),
+                makeNonEmpty(pqf.substring(n + 1, k)),
+                makeNonEmpty(pqf.substring(k + 1))
+              )
           }
       }
 
@@ -140,7 +172,7 @@ object LenientUri {
         val scheme = makeScheme(p0)
         val (auth, pathQF) = p1.indexOf('/') match {
           case -1 => (Some(p1), "")
-          case n => (Some(p1.substring(0, n)), p1.substring(n))
+          case n  => (Some(p1.substring(0, n)), p1.substring(n))
         }
         val (path, query, frag) = splitPathQF(pathQF)
         scheme match {
@@ -155,7 +187,7 @@ object LenientUri {
           case -1 =>
             Left(s"No scheme found: $str")
           case n =>
-            val scheme = makeScheme(p0.substring(0, n))
+            val scheme              = makeScheme(p0.substring(0, n))
             val (path, query, frag) = splitPathQF(p0.substring(n + 1))
             scheme match {
               case None =>
@@ -167,16 +199,13 @@ object LenientUri {
     }
   }
 
-  private[this] val delims: Set[Char] = ",/?:@&=+$# %".toSet
+  private[this] val delims: Set[Char] = ",/?:@&$# %".toSet
 
   private def percent(s: String): String =
-    "%" + ByteVector.encodeUtf8(s).
-      fold(throw _, identity).
-      toHex
+    "%" + ByteVector.encodeUtf8(s).fold(throw _, identity).toHex
 
   def percentEncode(s: String): String =
-    s.flatMap(c =>
-      if (delims.contains(c)) percent(c.toString) else c.toString)
+    s.flatMap(c => if (delims.contains(c)) percent(c.toString) else c.toString)
 
   def percentDecode(s: String): String =
     if (!s.contains("%")) s
@@ -188,13 +217,14 @@ object LenientUri {
             else if (c == '%') ("%", res)
             else (acc, res :+ c.toByte)
         }
-        ._2.decodeUtf8.fold(throw _, identity)
+        ._2
+        .decodeUtf8
+        .fold(throw _, identity)
 
   private def stripLeading(s: String, c: Char): String =
     if (s.length > 0 && s.charAt(0) == c) s.substring(1)
     else s
 
-
   implicit val encodeLenientUri: Encoder[LenientUri] =
     Encoder.encodeString.contramap(_.asString)
 

modules/restserver/src/main/scala/docspell/restserver/routes/Authenticate.scala

@@ -26,7 +26,7 @@ object Authenticate {
     val authUser = getUser[F](S.loginSession(cfg))
 
     val onFailure: AuthedRoutes[String, F] =
-      Kleisli(req => OptionT.liftF(Forbidden(req.authInfo)))
+      Kleisli(req => OptionT.liftF(Forbidden(req.context)))
 
     val middleware: AuthMiddleware[F, AuthToken] =
       AuthMiddleware(authUser, onFailure)
@@ -41,12 +41,12 @@ object Authenticate {
     val authUser = getUser[F](S.loginSession(cfg))
 
     val onFailure: AuthedRoutes[String, F] =
-      Kleisli(req => OptionT.liftF(Forbidden(req.authInfo)))
+      Kleisli(req => OptionT.liftF(Forbidden(req.context)))
 
     val middleware: AuthMiddleware[F, AuthToken] =
       AuthMiddleware(authUser, onFailure)
 
-    middleware(AuthedRoutes(authReq => f(authReq.authInfo).run(authReq.req)))
+    middleware(AuthedRoutes(authReq => f(authReq.context).run(authReq.req)))
   }
 
   private def getUser[F[_]: Effect](auth: String => F[Login.Result]): Kleisli[F, Request[F], Either[String, AuthToken]] =

modules/store/src/main/resources/db/migration/postgresql/V1.0.0__initial_database.sql

@@ -1,4 +1,3 @@
-
 CREATE TABLE "filemeta" (
   "id" varchar(254) not null primary key,
   "timestamp" varchar(40) not null,

project/Dependencies.scala

@@ -6,26 +6,24 @@ object Dependencies {
 
   val BcryptVersion = "0.4"
   val BetterMonadicForVersion = "0.3.1"
-  val BitpeaceVersion = "0.4.0"
+  val BitpeaceVersion = "0.4.1"
   val CirceVersion = "0.12.3"
-  val DoobieVersion = "0.8.6"
+  val DoobieVersion = "0.8.7"
   val FastparseVersion = "2.1.3"
-  val FlywayVersion = "6.0.8"
+  val FlywayVersion = "6.1.3"
   val Fs2Version = "2.1.0"
   val H2Version = "1.4.200"
-  val Http4sVersion = "0.21.0-M5"
+  val Http4sVersion = "0.21.0-M6"
   val KindProjectorVersion = "0.10.3"
   val Log4sVersion = "1.8.2"
   val LogbackVersion = "1.2.3"
-  val MariaDbVersion = "2.5.1"
+  val MariaDbVersion = "2.5.2"
   val MiniTestVersion = "2.7.0"
-  val PostgresVersion = "42.2.8"
-  val PureConfigVersion = "0.12.1"
-  val SqliteVersion = "3.28.0"
+  val PostgresVersion = "42.2.9"
+  val PureConfigVersion = "0.12.2"
+  val SqliteVersion = "3.30.1"
   val StanfordNlpVersion = "3.9.2"
-  val TikaVersion = "1.22"
-  val javaxMailVersion = "1.6.2"
-  val dnsJavaVersion = "2.1.9"
+  val TikaVersion = "1.23"
   val YamuscaVersion = "0.6.1"
 
   val stanfordNlpCore = Seq(
@@ -130,12 +128,6 @@ object Dependencies {
     "org.flywaydb" % "flyway-core" % FlywayVersion
   )
 
-  val javaxMail = Seq(
-    "javax.mail" % "javax.mail-api" % javaxMailVersion,
-    "com.sun.mail" % "javax.mail" % javaxMailVersion,
-    "dnsjava" % "dnsjava" % dnsJavaVersion intransitive()
-  )
-
   val yamusca = Seq(
     "com.github.eikek" %% "yamusca-core" % YamuscaVersion
   )
@@ -151,7 +143,7 @@ object Dependencies {
   val betterMonadicFor = "com.olegpy" %% "better-monadic-for" % BetterMonadicForVersion
 
   val webjars = Seq(
-    "swagger-ui" -> "3.24.0",
+    "swagger-ui" -> "3.24.3",
     "Semantic-UI" -> "2.4.1",
     "jquery" -> "3.4.1"
   ).map({case (a, v) => "org.webjars" % a % v })

project/build.properties

@@ -1 +1 @@
-sbt.version=1.3.3
+sbt.version=1.3.6

project/plugins.sbt

@@ -2,6 +2,6 @@ addSbtPlugin("com.github.eikek" % "sbt-openapi-schema" % "0.5.0")
 addSbtPlugin("com.eed3si9n" % "sbt-buildinfo" % "0.9.0")
 addSbtPlugin("com.typesafe.sbt" % "sbt-git" % "1.0.0")
 addSbtPlugin("io.spray" % "sbt-revolver" % "0.9.1")
-addSbtPlugin("com.typesafe.sbt" % "sbt-native-packager" % "1.4.1")
-addSbtPlugin("com.jsuereth" % "sbt-pgp" % "2.0.1-M3")
+addSbtPlugin("com.typesafe.sbt" % "sbt-native-packager" % "1.5.2")
+addSbtPlugin("com.jsuereth" % "sbt-pgp" % "2.0.1")
 addSbtPlugin("com.47deg" % "sbt-microsites" % "0.9.2")